RXRA Gene - Retinoid X Receptor Alpha

Comprehensive gene card for RXRA, a nuclear receptor involved in retinoid signaling, metabolism, and cancer.

Gene Information Card

Symbol RXRA
Full Name Retinoid X Receptor Alpha
Gene Type protein-coding
Chromosomal Location 9q34.2
NCBI Gene ID 6256 ncbi.nlm.nih.gov/gene/6256
Ensembl ID ENSG00000186350
UniProt ID P19793
OMIM ID 180245
HGNC ID 10477
Aliases NR2B1, RXR-alpha

Description

RXRA encodes retinoid X receptor alpha, a nuclear receptor that forms heterodimers with other nuclear receptors (e.g., RAR, VDR, PPAR, LXR, FXR) to regulate transcription of genes involved in cell differentiation, metabolism, and development. RXRA is activated by 9-cis retinoic acid and plays a critical role in retinoid signaling, lipid metabolism, and cancer biology.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Acute Promyelocytic Leukemia (APL) RXRA fusions (e.g., PML-RARA) disrupt retinoid signaling, blocking differentiation. PMID: 25439706; COSMIC
Hepatocellular Carcinoma RXRA overexpression and altered heterodimerization promote proliferation. PMID: 26030144; NCBI Gene
Type 2 Diabetes RXRA variants affect PPAR/RXR signaling, influencing insulin sensitivity. PMID: 19088185; ClinVar
Alzheimer's Disease RXRA dysregulation linked to amyloid-beta metabolism and neuroinflammation. PMID: 25982909; OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 18.5 High
Kidney 12.3 Medium
Heart 8.7 Medium
Brain 6.2 Low
Lung 10.1 Medium
Cell Line Expression
Cell Line nTPM Notes
HepG2 15.2 Hepatocellular carcinoma cell line
MCF7 9.8 Breast cancer cell line
A549 11.4 Lung carcinoma cell line
K562 7.3 Leukemia cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) missense <0.01% Loss of start codon; likely loss of function
c.857C>T (p.Pro286Leu) missense 0.02% Alters ligand-binding domain; reduced transactivation
c.1222G>A (p.Glu408Lys) missense 0.01% Impairs heterodimerization; dominant negative effect
Mutation functional classification

Loss of Function (LOF)

Mutations in the DNA-binding or ligand-binding domains that reduce transcriptional activity (e.g., p.Pro286Leu).

Gain of Function (GOF)

Rare; fusions (e.g., PML-RARA) create constitutive activation in APL.

Dominant Negative (DN)

Mutations that disrupt heterodimerization (e.g., p.Glu408Lys) and inhibit wild-type function.

Gene Ontology (GO)

• GO:0004879~nuclear receptor activity • GO:0003707~steroid hormone receptor activity
• GO:0008270~zinc ion binding • GO:0045944~positive regulation of transcription by RNA polymerase II
• GO:0006357~regulation of transcription by RNA polymerase II

Pathways

Retinoic acid receptor signaling pathway (RXR/RAR)
PPAR signaling pathway
Vitamin D receptor pathway
LXR/RXR activation
FXR/RXR activation

Protein Summary

Retinoid X receptor alpha (RXRα) is a 462-amino-acid nuclear receptor with a conserved DNA-binding domain and a ligand-binding domain. It functions as a master regulator by forming permissive heterodimers with multiple nuclear receptors, enabling diverse signaling inputs. RXRα is ubiquitously expressed, with highest levels in liver and kidney. Post-translational modifications (phosphorylation, sumoylation) modulate its activity. In cancer, RXRA fusions (e.g., PML-RARA) drive leukemogenesis, while point mutations can alter metabolic gene expression.

Related Products

Product name Cat.No. Species Gene ID
RXRA Knockout HEK293 Cell Line EDJ-KQ864 Human 6256 Details Get a Quote
RXRA Knockout HeLa Cell Line EDJ-KQ18371 Human 6256 Details Get a Quote
RXRA Knockout A-549 Cell Line EDC08207 Human 6256 Details Get a Quote
RXRA Knockout HCT 116 Cell Line EDJ-KQ19673 Human 6256 Details Get a Quote
RXRA Knockout 5637 Cell Line EDJ-KZ440 Human 6256 Details Get a Quote
RXRA and RXRB Knockout A-549 Cell Line EDC08241 Human 6256 and 6257 Details Get a Quote
Displaying Records 1 To 6 Of 6 Records
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