RXRA Gene - Retinoid X Receptor Alpha
Comprehensive gene card for RXRA, a nuclear receptor involved in retinoid signaling, metabolism, and cancer.
Gene Information Card
| Symbol | RXRA |
|---|---|
| Full Name | Retinoid X Receptor Alpha |
| Gene Type | protein-coding |
| Chromosomal Location | 9q34.2 |
| NCBI Gene ID | 6256 ncbi.nlm.nih.gov/gene/6256 |
| Ensembl ID | ENSG00000186350 |
| UniProt ID | P19793 |
| OMIM ID | 180245 |
| HGNC ID | 10477 |
| Aliases | NR2B1, RXR-alpha |
Description
RXRA encodes retinoid X receptor alpha, a nuclear receptor that forms heterodimers with other nuclear receptors (e.g., RAR, VDR, PPAR, LXR, FXR) to regulate transcription of genes involved in cell differentiation, metabolism, and development. RXRA is activated by 9-cis retinoic acid and plays a critical role in retinoid signaling, lipid metabolism, and cancer biology.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Acute Promyelocytic Leukemia (APL) | RXRA fusions (e.g., PML-RARA) disrupt retinoid signaling, blocking differentiation. | PMID: 25439706; COSMIC |
| Hepatocellular Carcinoma | RXRA overexpression and altered heterodimerization promote proliferation. | PMID: 26030144; NCBI Gene |
| Type 2 Diabetes | RXRA variants affect PPAR/RXR signaling, influencing insulin sensitivity. | PMID: 19088185; ClinVar |
| Alzheimer's Disease | RXRA dysregulation linked to amyloid-beta metabolism and neuroinflammation. | PMID: 25982909; OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 18.5 | High |
| Kidney | 12.3 | Medium |
| Heart | 8.7 | Medium |
| Brain | 6.2 | Low |
| Lung | 10.1 | Medium |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 15.2 | Hepatocellular carcinoma cell line |
| MCF7 | 9.8 | Breast cancer cell line |
| A549 | 11.4 | Lung carcinoma cell line |
| K562 | 7.3 | Leukemia cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | missense | <0.01% | Loss of start codon; likely loss of function |
| c.857C>T (p.Pro286Leu) | missense | 0.02% | Alters ligand-binding domain; reduced transactivation |
| c.1222G>A (p.Glu408Lys) | missense | 0.01% | Impairs heterodimerization; dominant negative effect |
Mutation functional classification
Loss of Function (LOF)
Mutations in the DNA-binding or ligand-binding domains that reduce transcriptional activity (e.g., p.Pro286Leu).
Gain of Function (GOF)
Rare; fusions (e.g., PML-RARA) create constitutive activation in APL.
Dominant Negative (DN)
Mutations that disrupt heterodimerization (e.g., p.Glu408Lys) and inhibit wild-type function.
View complete mutation data:
Gene Ontology (GO)
| • GO:0004879~nuclear receptor activity | • GO:0003707~steroid hormone receptor activity |
| • GO:0008270~zinc ion binding | • GO:0045944~positive regulation of transcription by RNA polymerase II |
| • GO:0006357~regulation of transcription by RNA polymerase II |
Pathways
• Retinoic acid receptor signaling pathway (RXR/RAR)
• PPAR signaling pathway
• Vitamin D receptor pathway
• LXR/RXR activation
• FXR/RXR activation
Protein Summary
Retinoid X receptor alpha (RXRα) is a 462-amino-acid nuclear receptor with a conserved DNA-binding domain and a ligand-binding domain. It functions as a master regulator by forming permissive heterodimers with multiple nuclear receptors, enabling diverse signaling inputs. RXRα is ubiquitously expressed, with highest levels in liver and kidney. Post-translational modifications (phosphorylation, sumoylation) modulate its activity. In cancer, RXRA fusions (e.g., PML-RARA) drive leukemogenesis, while point mutations can alter metabolic gene expression.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| RXRA Knockout HEK293 Cell Line | EDJ-KQ864 | Human | 6256 | Details Get a Quote |
| RXRA Knockout HeLa Cell Line | EDJ-KQ18371 | Human | 6256 | Details Get a Quote |
| RXRA Knockout A-549 Cell Line | EDC08207 | Human | 6256 | Details Get a Quote |
| RXRA Knockout HCT 116 Cell Line | EDJ-KQ19673 | Human | 6256 | Details Get a Quote |
| RXRA Knockout 5637 Cell Line | EDJ-KZ440 | Human | 6256 | Details Get a Quote |
| RXRA and RXRB Knockout A-549 Cell Line | EDC08241 | Human | 6256 and 6257 | Details Get a Quote |
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